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Reinstall preprocessCore without threading on Linux#8

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hsun3163 wants to merge 1 commit intoStatFunGen:mainfrom
hsun3163:hsun3163/preprocesscore-disable-threading-linux
Open

Reinstall preprocessCore without threading on Linux#8
hsun3163 wants to merge 1 commit intoStatFunGen:mainfrom
hsun3163:hsun3163/preprocesscore-disable-threading-linux

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@hsun3163 hsun3163 commented Apr 22, 2026

Summary

  • add a Linux-only post-install hook in pixi-setup.sh
  • rebuild preprocessCore from source with --disable-threading after the full r-base package install
  • leave the package lists unchanged and avoid extra helper/test files in this patch

Why

The stock conda bioconductor-preprocesscore build pulls in the threaded code path, which fails in SeSAMe dye-bias normalization on Linux. Reinstalling only preprocessCore with --disable-threading keeps the existing pixi dependency flow but replaces the problematic build in the full R environment.

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